Transformation matrix

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Inheritance graph

Defined in file : brainvisa/types/registration.py

Used in the following processes

3DFFDTransformationApplication
3DFFDTransformationEstimation
[Volume] Block Matching
[Volume] Resample
Anatomist Check Register
Anatomist Show 3D Activations
Anatomist Show Registration
Anatomy Normalization (using AimsMIRegister)
Apply A Transformation To a White Mesh
Apply direct or inverse Transformation
Apply FFD on atlas label
Apply Transformation
Block matching transformation estimation
Border generation
Brainvisa Show Transformation Matrix
compare two transformations
Compose 2 transformations
Compute GTM PVC based methods
Create DISCO deformation field from subjectA to subjectB
Create DISCO+DARTEL deformation field from subjectA to subjectB
Create Sulcus Label Volume
DICE calculation : FFD on label with different knot grid
DICE calculation : FFD on label with different knot grid positions
DICE calculation : transformations evaluation
DigitalAtlasRegistrationOnVolume
DigitalAtlasRegistrationOnVolumeParallel
EXPERIMENTAL: Compute template descaling transformation
extract raw transformation from headers
Free form deformation registration pipeline
Free form deformation transformation application
Free form deformation transformation estimation
FSL to AIMS transformation converter
Import MNI CIVET Segmentation
Interhemispheric plane correction
Linear registration pipeline
Mesh deformation component
Move volume between MNI - T1MRI - PET (spm12)
Move volume between MNI - T1MRI - PET (spm8)
Mutual information transformation estimation
Nuclear Imaging quality check
Registration pipeline
Resample images into a Talairach-aligned grid
Resample ROI graph
Resample to Template Space
Resampling
Resampling volume
Right Insular Pole Projection
Rigid registration with mutual information
SPAM recognition, global registration
SPAM recognition, local registration
SPAM recognition, Markovian model
Split ROI
SPM sn3d to AIMS transformation converter
SPM to AIMS transformation converter
spm12 - Coregister: Estimate & Reslice - generic
spm12 - Coregister: Estimate Only
spm12 - Coregister: Estimate Only - generic
spm8 - Coregister: Estimate & Reslice - generic
spm8 - Coregister: Estimate Only - generic
Transform a commissures AC-PC coordinates
Transform fibre bundles between subjects
Transform fibre bundles into the common space
Transform graph between subjects
Transform graph into the common space
Transform mesh between subjects
Transform mesh into the common space
Transform volume between subjects
Transform volume into the common space
Transformation inverter
View in hippocampic referential

Associated formats

Matlab file
Transformation matrix

Associated ontology rules

  • flat :
  • <filename>_TO_talairach
    talairach_TO_<filename>
  • brainvisa-3.2.0 :
  • {center}/registration/*
    {center}/{subject}/pet/{acquisition}/registration/*
    {center}/{subject}/registration/*
  • brainvisa-3.0 :
  • {protocol}/registration/*
    {protocol}/{subject}/registration/*
    {protocol}/{subject}/pet/{acquisition}/registration/*
  • brainvisa-3.1.0 :
  • {protocol}/registration/*
    {protocol}/{subject}/registration/*
    {protocol}/{subject}/pet/{acquisition}/registration/*
  • shared :
  • transformation/*

    Key attributes

  • brainvisa-3.0 :
  • protocol ,  subject ,  acquisition ,  source.subject ,  dest.subject ,  source.acquisition ,  dest.acquisition ,  filename_variable
  • PetPhantom :
  • phantom ,  center ,  acquisition ,  reconstruction
  • freesurfer :
  • subject
  • connectomist-1.0 :
  • subject
  • brainvisa-3.2.0 :
  • rescan ,  acquisition_date ,  time_point ,  time_duration ,  center ,  subject ,  acquisition ,  research_group ,  subject_age ,  tracer ,  reconstruction_diameter ,  Study ,  mapped ,  contrast ,  Template ,  analysis ,  graph_version ,  sulci_recognition_session ,  manually_labelled ,  automatically_labelled ,  study ,  specie ,  photo_number ,  serie ,  scan_session ,  marker ,  slice_number ,  reconstruction ,  source.acquisition ,  destination.acquisition ,  filename_variable ,  transformation ,  direction ,  side ,  pet_tracer ,  pet_acquisition ,  sulcus ,  processing ,  segmentation_method
  • shared :
  • filename_variable
  • brainvisa-3.1.0 :
  • protocol ,  subject ,  acquisition ,  center ,  tracer ,  reconstruction ,  filename_variable ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  t1mri ,  pet ,  sulcus